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Hi Howard,
Yes, you're correct that Subcategories (or maintaining multiple external overlay files) is the only way to manage large numbers of overlay items and this can take a considerable time as there is no group-select facility in MM (only individual drag and drop).
However, if you have a very large number of Marks or Waypoints in well-separated groups (i.e. which can fit into simple rectangles defined by Latitude and Longitude lines) then you could proceed as follows:
Export all the data as a .CSV file and import into a spreadsheet such as Excel (Open Office is possible but more problematic).
Sort the Latitude column into increasing or decreasing sequence and delete all rows to the north of the rectangle's northern boundary.
Repeat sorting and deleting for the south latitude and east and west longitude limits.
Re-sort to the original order, or alphabetically (particularly to use on PDA version). Save the .CSV file and import back into MM.
You might also be able to use this technique with Routes and Tracks, but it's more complicated because those have header rows (see .CSV in the MM Help : Index pulldown menu).
Tip: When importing or creating large numbers of overlay items, first change the default category names (Track, Route, etc.) to something else (e.g. just add an 's' to the end). Then when you import new data (e.g. GPS tracks recorded over a complete holiday) they will all go into the default category which you can then rename and/or drag into a relevant category.
Cheers, Alan.
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